FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004949408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17983643
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAAGG1770380898.44394709125397No Hit
ATCCAAGA534810.29738690875925416No Hit
AACCAAGG342280.19032851130329934No Hit
ATCCAACG264830.14726159766405506No Hit
ATCCAAGC228190.12688752773840095No Hit
ATACAAGG204200.11354762769701333No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)