FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6290752
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC616916798.06724219934279No Hit
TTTATCCA474730.7546474570925702No Hit
TATATCCC106150.16873976275014496No Hit
TTAATCCC87040.1383618365499069No Hit
ATTATCCC85360.13569124963120466No Hit
TTTAACCC78600.12494531655356943No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)