FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1110494
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA47620.4288181656091793No Hit
CATTCAACTAGGCATG41210.3710961067777044No Hit
ACTGGGCACTTCTCGC32660.29410334499781177No Hit
GGGGGGGGGGGGGGGG32350.2913117945707046No Hit
TGTAAGCTGTTGTGAC31610.28464809355115833No Hit
GTCGACCGATGCTCAA30970.2788848926693886No Hit
TAGTTGCGACATAGCT19780.17811892725219586No Hit
GCTTTAGGAACTAGTC18920.1703746260673178No Hit
CATCAGTGATTCGCAA18520.16677262551621172No Hit
CAGGAGCCTCGTGCAC15840.14263922182380093No Hit
CAGGAGCCTTCCAATG13370.12039686842072087No Hit
TCCTTAAACAGGGAGG12190.10977096679495792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)