FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11191045
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTCAGG1098399798.1498778711014No Hit
CGCTCAGA259210.23162269475281352No Hit
CGCTCCGG254760.2276463011273746No Hit
CGCGCAGG198040.17696291990604987No Hit
CGCACAGG161810.14458882079376859No Hit
CGCTCTGG118570.10595078475691949No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)