FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15436573
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCAGAC1516121998.21622325110631No Hit
ACTCAGCC756390.48999865449410307No Hit
ACACAGAC442380.28657915199183137No Hit
ACTCAGAA290780.1883708255711938No Hit
ACTCACAC169610.10987542377443492No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)