FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4283365
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT420523898.17603683085612No Hit
ATCGTACA167610.39130450008346246No Hit
ATAGTACT88280.20609964362131175No Hit
ATCGAACT85420.19942265018274186No Hit
AACGTACT61610.14383551250010213No Hit
ATCGTAAT48970.11432600303733163No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)