FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences702224
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC42990.612197817220716No Hit
CTCCTAGTGAACGTAA37140.5288910660985668No Hit
CGACCAGACGCGCTGT35460.504967076032719No Hit
TAGCTTTACCCTATCC32100.45711909590102306No Hit
CCAGGACTGTAACTCG24660.3511699970379822No Hit
ATCTGTACTGGGACTA23230.33080612454145686No Hit
GTTCTCGACCGTAGAG22910.3262491740527239No Hit
CTTCCTTTGGCTCAGC21850.31115427555879605No Hit
CGATCAAACCCGGCTA20980.29876506641755335No Hit
AGACCATTGAATCCAC20890.2974834240925972No Hit
GGCAACAGAATAGCAA18430.26245186721046276No Hit
TGCTGCTACTTTCTTG17330.2467873499054433No Hit
ACAGCCGACTTGCGTA17280.24607532639157875No Hit
GGGGGGGGGGGGGGGG16580.23610699719747547No Hit
AACTTACCTCACCTAA15620.22243614573127665No Hit
CGCGTTGGAGCGGTTC14900.21218300713162752No Hit
ATCGAAAGATTTCCGC14710.20947731777894232No Hit
GTAACTGTGTGAAAGT13870.19751532274601838No Hit
CCCTGAACTAGCTTTG13590.19352799106837704No Hit
AGTGGAGTGAGTTGAA13330.1898254687962815No Hit
GGGTAGAACCAGTCTA13050.1858381371186402No Hit
CAATTCGGATAACGGG12840.1828476383604092No Hit
AAGAACCCTTAACCCA12380.1762970220328556No Hit
TTCCTAAACTAATGCC12060.17174007154412266No Hit
TTTAGTCTGAGCAATA11550.16447743170270457No Hit
GTGAAGCGATCCCAGG11470.16333819408052133No Hit
CGCGATCGATATCTGG11460.16319578937774842No Hit
TGGAACACTCCTAGTA11180.1592084577001071No Hit
TGCAGATACTGCCACG10840.15436669780582835No Hit
TCCGGGAACGTTCTCC10480.1492401285060038No Hit
AGTCCTGCTCGAACGA10390.14795848618104765No Hit
CACATCCTGAGCCTAT10330.1471040579644102No Hit
TGATAGAGAGACTGTT10310.1468192485588644No Hit
GCAACTTGAAGGTGCA10240.14582241563945408No Hit
CTTTAACTGTCCGTAA10160.14468317801727082No Hit
CATAGGTACAAGGTGC10140.14439836861172503No Hit
TGCAGTATGACACCGC10110.14397115450340633No Hit
AGGTGTGGATCATGTG9970.14197748866458565No Hit
GAGTGTTACACCTGCG9850.1402686322313108No Hit
TGGCAATTGAGTGGTG9740.13870218050080887No Hit
TCAAAGCACTCTGCAA9660.13756294287862564No Hit
CTTAGATCTTGTCACA9460.13471484882316753No Hit
CGAGTCTCTGCTACGC9380.1335756112009843No Hit
CTATTGGGACTTGTGA9360.1332908017954385No Hit
TACGTTTACTGCACCG9300.13243637357880106No Hit
TCTCAGAGATGCATGT9160.1304427077399804No Hit
ATGTACGTGTACTTTC9160.1304427077399804No Hit
ATTTCTGACGGGTAGT8940.1273098042789765No Hit
TACTGTTTGCTTAAGC8840.12588575725124745No Hit
GCATGATACTTGCGTA8820.12560094784570167No Hit
TGAACTGTGAACGTAA8750.12460411492629132No Hit
CTCAATTTGGAATCTC8740.12446171022351843No Hit
GGTCTAAACTCCTACC8660.12332247260133519No Hit
GGTCGCATGGTACTAC8620.12275285379024357No Hit
AGAGTACCTTAATCGC8590.12232563968192485No Hit
TCCATTTGAAATCTGC8520.12132880676251452No Hit
TTCTTAGACGTCCCGA8480.1207591879514229No Hit
CACCAGGTGCGCCACA8420.11990475973478547No Hit
TCTATGGGATGCTCAA8390.11947754562646677No Hit
GGCTGACTGAAACTGA8380.11933514092369386No Hit
CTAGCTCACGAATAGT8370.11919273622092097No Hit
TGAGGGATGTACGTTG8230.1171990703821003No Hit
ATGTCCAGACCGCTAG8180.11648704686823579No Hit
GGGTGTGCTCGCAAAG8170.11634464216546288No Hit
AGCCAATTGTTATGGC8100.11534780924605255No Hit
CTTTCGTCTCGAACGA8090.11520540454327964No Hit
GGGATGTGACTGGAAG8000.11392376221832351No Hit
TGCGCAGACATCAGGG7980.1136389528127777No Hit
CTACAACGAATCTGTG7970.11349654811000477No Hit
CACATTACTGATGGAC7910.11264211989336737No Hit
TTGCGGTCTTTTGGGT7870.11207250108227573No Hit
GTAATCTCTACACAAA7830.11150288227118413No Hit
CGAGTCTCTTGGAACG7830.11150288227118413No Hit
TCCGGGTGAACACCTA7820.11136047756841122No Hit
ATAGCCAACCGTTCTC7650.10893959762127185No Hit
AGACTACTGGCCCTAG7630.10865478821572604No Hit
TCATCATTGGACTCGC7570.1078003599990886No Hit
TCGGACCGATAGGCGA7550.1075155505935428No Hit
ACCTCAGCTAATCCGT7550.1075155505935428No Hit
CATTCTATGCCTAGCG7500.10680352707967827No Hit
CATAGTCGAAGATTCC7370.10495226594363052No Hit
TGTAAGCACGCGCTGT7350.10466745653808472No Hit
AGGCGATGACCTGCGA7320.104240242429766No Hit
AGCTTGTGATTGCGTA7310.10409783772699309No Hit
GATATGAGACCAACGC7290.10381302832144729No Hit
TAGTACCGAACGAGCA7270.10352821891590148No Hit
AAAGCCTTGAACCAAA7270.10352821891590148No Hit
GGGCCTTGACTATCTT7240.10310100480758276No Hit
TCGTTGCTGTATTGCG7220.10281619540203696No Hit
CTAACAGTGCATGATC7210.10267379069926405No Hit
GTCTAATCTAAGTTCC7150.10181936248262662No Hit
ACCAAGTTGAAGCTAA7080.1008225295632163No Hit
GTATTCACTGCTCCTT7070.1006801248604434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)