FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7964784
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC775804797.40436149932No Hit
TTTATCCA607800.7631092067280167No Hit
GTTATCCC250390.3143713627387761No Hit
ATTATCCC199110.24998794694244061No Hit
TTTAACCC151280.18993609870650605No Hit
TTTATACC142950.17947756022008882No Hit
TATATCCC128950.16190018461266495No Hit
TTAATCCC99520.12495003003220174No Hit
TTTTTCCC83160.10440961110809784No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)