FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004949457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16950839
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG1660381197.95273850456606No Hit
TCTTTTAG513610.3029997512217537No Hit
TCTAATAG379680.2239889128791796No Hit
TCTATTAA355750.20987161756418077No Hit
ACTATTAG336680.19862143696840023No Hit
TCAATTAG308770.18215617527840364No Hit
TCTATAAG244820.1444294291273724No Hit
TCTATTTG203340.11995866399297404No Hit
TATATTAG178790.10547560507181974No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)