FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3211420
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT561331.7479183663301594No Hit
GAAGCAGTGGAACCTT208770.6500862546786157No Hit
GTTCTTCCTAACGTAA166940.5198323483069794No Hit
GATACGTACCGCTCGA147200.45836421271587025No Hit
CGCTTAAGATAATAGG131050.40807493258433963No Hit
TGTCCCATGAGACAAT130380.4059886280835269No Hit
CATGGAGGATCGACAT128220.3992626314838919No Hit
AAAGCATGATCTTTGT117710.3665356758069639No Hit
TGAGCGCACAGGACAC116370.3623630668053384No Hit
TGTCGAAACTTCGCAA108280.33717171842985344No Hit
TAATTGCCTGTCTGGC107570.3349608584364549No Hit
GGAAGGACTAGGTAAT95700.2979990160116086No Hit
GGGGGGGGGGGGGGGG91810.28588599435763623No Hit
AATGATGGAAAGCTAA83480.2599473130266362No Hit
CATGTCAGAGGTTTGT83040.258577202608192No Hit
TCGACCTTGTTTCGCC80780.25153981727709235No Hit
GTGAGATCTCGATTAC68440.2131144478143625No Hit
ATGGGTACTTGGCTGC64780.20171762024275866No Hit
AAACGACCTAGGGAGG64330.20031637095116803No Hit
AGCCTACCTTAACTCG60360.18795423831202396No Hit
TTGCGATGACATTCAG59990.186802100005605No Hit
GCTATGATGACCTGCG59920.18658412789357978No Hit
CAGCTCACTGTTTACG59560.18546312846030727No Hit
TGTTCCTCTTTATGGC58070.18082343636148496No Hit
CTGCCTTGACCATAAC54460.1695823031556134No Hit
CAATGTGACCAACGCC53790.1674959986548007No Hit
CCTGTTGACCCTAGTA53300.1659701938706242No Hit
CATGCAAACGAAGGCT52450.16332338965317522No Hit
TAACCAGACATCACAC51730.1610813907866302No Hit
CACAGCTCTGGACTGA51590.16064544656257979No Hit
AGCTTGTGACTCACTC50970.15871483642749937No Hit
CATGATGTGTCATGTG50710.15790522572569143No Hit
CTATTCAACCGAACGA49530.15423083869440934No Hit
ATGCCGCGATGCCACG49370.153732616724066No Hit
ATGGGTACTTTCGGGC49360.15370147785091953No Hit
TGGGCCATGCGTTCTC49060.15276731165652577No Hit
TTGTTTGTGATACGCT48270.15030734067795556No Hit
ATTAGCGTGGTCGGTC47790.14881267476692553No Hit
AGAACGCGAGGAATAT47440.14772281420679947No Hit
CATTAGTCTATTCTGG46170.14376817731719924No Hit
CACTATACTACGCCAC45300.14105909535345734No Hit
GGGCTGACTAATACAG44840.13962670718872028No Hit
CCGCTATTGTTCGCAA44270.1378517914193721No Hit
GGGTCGTACCGCTCGA43650.13592118128429168No Hit
AGCTCGGACCTTAAGC42880.1335234880520144No Hit
TTGACGTGACCTCAAA42770.13318096044740332No Hit
AACGTCCCTTACAGAA41650.12969340665499998No Hit
ATAGGAAACAGACTTC41610.12956885116241415No Hit
CTGATTACTGCTTTGA41310.12863468496802039No Hit
AACCAACACCGGAATG41290.12857240722172744No Hit
CCCAATGCTGGAATGC41250.1284478517291416No Hit
GGTAGCCTGTGCCACG41220.12835443510970226No Hit
GGCTTGCGAGTACGTT41170.12819874074396997No Hit
CTGCCATTGCACAGTT40790.12701546356440455No Hit
TGGAGTTACAAGTCTC40700.1267352137060864No Hit
CCTACGGGATGGAACG40580.1263615472283289No Hit
ATAGCCAACATGGCCC40210.12520940892190993No Hit
TCCAAAGTGAAGGCCA39690.12359018751829408No Hit
TCAGGCTCTTAAAGCA39650.12346563202570826No Hit
TTGTAACCTCATCCTC39630.12340335427941534No Hit
TGTTTGTTGCGCTCGA39280.12231349371928928No Hit
CGATCAAACCGATCGC39270.12228235484614282No Hit
CGCTTACTGGCCACGT38760.12069427231567345No Hit
CGCTGAGTGTTAGCTG38470.11979124499442616No Hit
GCAGATACTCGGCTCA38180.11888821767317885No Hit
TGGGTGCACTTCTGAG37960.11820316246395676No Hit
CGCTTCCCTGCGCTGT37680.11733127401585591No Hit
GATACCATGTCTGGAT37440.1165839410603409No Hit
ATCTTACTGCGCACTG37190.11580546923167945No Hit
GCGTCGATGCTTGAAC37120.11558749711965423No Hit
TTCTAACACTACGTTG36980.11515155289560382No Hit
CATGTTACTAACGTGG36820.11465333092526048No Hit
CTCGGATCTTTCTGAG36560.11384372022345256No Hit
AGCCGGTACGCGCAAA35720.11122805487915002No Hit
GTAAGAAACGACAAAT35490.11051186079678149No Hit
CCTTCAGTGTAGCTTG35390.1102004720653169No Hit
CTTAGGCCTTATGACC35260.10979566671441295No Hit
TACGCCTTGGGTTGAG35220.10967111122182711No Hit
CCTCCCTTGTTTCGCC35130.10939086136350898No Hit
ACCTGCTTGCCAAACT35060.10917288925148376No Hit
AGTGGTACTCAACGCC35050.1091417503783373No Hit
GCGACGTTGCTTAGTG34770.10826986193023647No Hit
CGAGTCTCTTACTTTC34420.10718000137011043No Hit
TACAACCGATTCCATT34410.10714886249696397No Hit
AACCACTGAAAACATG34300.10680633489235292No Hit
ATCGCAATGTAACTCG34180.10643266841459541No Hit
TTCACGCTGTGGGCAA33940.10568533545908042No Hit
ATTGAGAGATGATCAC33800.10524939123503No Hit
ACCTCCATGGAATTGA33770.1051559746155906No Hit
TGAGATAGACTCATCC33660.10481344701097958No Hit
GAAAGTAACCCTGCGA33610.10465775264524727No Hit
AGAACAATGAGTCGGA33540.10443978053322207No Hit
AACAGCTACTCGAGAG33530.10440864166007562No Hit
TATCTCCCTGGAATTA33440.10412839180175748No Hit
TCCGGGATGCGAGTTT33230.10347447546568186No Hit
GTCCTGACTTTACGAC33070.1029762534953385No Hit
GCGACAAGAAAGGCTG32720.10188639293521246No Hit
TGGTCCTTGTTTCTGT32510.10123247659913683No Hit
CATGTCAGAACAGGTG32440.10101450448711162No Hit
GGTCAGAGAACCAGTT32310.10060969913620765No Hit
CCTTCTTTGGATCATC32120.10001806054642495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)