FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004949470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17531601
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC1711201497.60668178565095No Hit
CAACCATA679660.38767708665055745No Hit
CAACCCTC613730.35007070945773866No Hit
CCACCATC574110.3274715184312032No Hit
CAACCAAC531030.30289874838013936No Hit
CACCCATC368260.21005497444300725No Hit
AAACCATC245940.14028382233887252No Hit
CAACAATC181330.10343037124789688RNA PCR Primer, Index 36 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)