FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5569013
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA544075997.69700663295274No Hit
CAGGAAGC463490.8322659688530086No Hit
CAGGAATA153690.27597349835599233No Hit
CAGGAAAA87970.15796335903687062No Hit
CACGAAGA79170.1421616361822104No Hit
AAGGAAGA74360.13352455812187905No Hit
CAGGAACA74330.13347068861214725No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)