FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5569013
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG171380.3077385525945082No Hit
ACTGTCCACAGGTCCC103350.1855804610260382No Hit
CTGGTGGACGCGGTTC101610.182456029461594No Hit
GTGGTTAACGGCCTGT85120.15284575561234998No Hit
AAGACAAACAGTACGG72390.12998712698282444No Hit
GTGTACTGACAGTCCG71710.12876608476223705No Hit
AGCTATCGACGGTTTA60150.10800836701225153No Hit
GGGTGAATGGACAAAT57450.10316011113638988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)