FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3387441
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT325871096.1997566894892No Hit
GCGCCCCT389411.1495698375263215No Hit
GCGCACCA245840.7257395774568473No Hit
GCGCACAT69540.2052877083320418No Hit
GCGCACCG58940.17399565040394802No Hit
GCCCACCT54790.1617445145170056No Hit
CCGCACCT54690.16144930642334435No Hit
GCGAACCT44380.1310133519668682No Hit
GCGCAACT44040.13000964444841992No Hit
GGGCACCT36410.1074852669020656No Hit
GAGCACCT35380.1044446235373546No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)