FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3483880
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG338554797.17748602133254No Hit
CTATTTGA248350.7128546333398396No Hit
CGATTTGG69200.19862911466525826No Hit
CTAATTGG61860.1775606507686832No Hit
CTTTTTGG60990.17506343502072402No Hit
CTATATGG56690.1627208744273626No Hit
CTATTTTG56260.16148661836802644No Hit
CAATTTGG54850.1574394066385754No Hit
CTATTTGC54820.15735329575071472No Hit
CTAGTTGG46380.13312743263258206No Hit
CTATTTCG44760.12847744468810637No Hit
CTATTAGG43050.12356912408004869No Hit
ATATTTGG42410.1217320918056879No Hit
GTATTTGG38990.11191545058957256No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)