FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2720024
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG262288796.42881827513287No Hit
CATCAGTA109670.4031949718090723No Hit
CATAAGTG78230.2876077564021494No Hit
CAGCAGTG75590.277901959688591No Hit
CCTCAGTG69730.25635803213501057No Hit
CATCACTG68820.2530124734193522No Hit
CAACAGTG66910.24599047655461864No Hit
CATCAGGG61090.22459360652700125No Hit
CTTCAGTG58710.21584368373220233No Hit
CATCAGAG48930.17988811863424733No Hit
AATCAGTG48150.17702049687796872No Hit
CATCAGTC45800.16838086722764212No Hit
CATCATTG36150.13290323908906684No Hit
CATGAGTG35550.13069737619962177No Hit
CATCAGTT35410.13018267485875124No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)