FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004949498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30708959
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG3017908498.27452633610928No Hit
TCTATTAA646770.2106128052077571No Hit
ACTATTAG608320.19809202910460103No Hit
TCTTTTAG528550.17211589621126525No Hit
TCTAATAG489350.15935089170557687No Hit
TCAATTAG463560.15095269103716608No Hit
TCTATTTG461110.15015487825556054No Hit
TCTATTAT372910.12143361811776167No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)