FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3483880
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT99640.2860029622145424No Hit
TCGCGGTGAGTCTTGA94470.2711631858732218No Hit
GGGGGGGGGGGGGGGG85740.24610491750576943No Hit
GTTAAGAGAGTACGTT67650.1941800521257908No Hit
CGCTTACTGATCACAC60040.17233659023846976No Hit
ATCTTACTGGTTTGGT55740.15999402964510834No Hit
TTGTGGTGAAAGACAT54020.15505700540776376No Hit
TACCAGTGATACGATC53500.15356441668484563No Hit
ATAGATGGAGAGTAAT53360.1531625658748292No Hit
ATTCCTAACTGCGTGC53270.15290423321124721No Hit
ATATGCCGAGAACAGC49390.14176722504793507No Hit
TGGAACACTTGAGGCA47560.13651446088843472No Hit
GCGGTTCGAAGCAAGC46280.1328403963397132No Hit
CTTGACGCTCAGGGTA44960.12905151727384412No Hit
GCTATACGACAGGTGA44510.1277598539559342No Hit
AGCTCTGCTGGCCTGT43810.1257505999058521No Hit
AGGTAGCGATTGACCA43790.12569319264727832No Hit
CTTTCTGCTCTTGTGA43750.12557837813013079No Hit
NNNNNNNNNNNNNNNN43640.125262638207975No Hit
ACTGGAACTCTGGAAG40690.11679506756834333No Hit
TGTGACTGACCGTTAA39560.1135515574589251No Hit
ACGCTCTTGCCTCAAA39110.1122598941410152No Hit
AGTTCACGACCAGAGA37640.1080404606358428No Hit
TTCCAAACTCCGCTAG37160.1066626864300722No Hit
ACCCTTTCTAGGTGAC36740.10545713400002296No Hit
TGTACCCTGCTGAGAG36590.10502657956071966No Hit
CACAGCTCTCTCTGGG35880.10298862188135069No Hit
ACATGTGTGTCAATGC35470.10181177308058831No Hit
ACACTCCACCGTACAT35440.10172566219272763No Hit
TCCCAGACTCCTAACA34870.10008955532337509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)