FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004949509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17622436
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCGGCA1735213498.46614849388587No Hit
ATCCGCCA379280.2152256362287257No Hit
ATCCCGCA268130.1521526308848561No Hit
ATCCGGAA264620.1501608517687339No Hit
ATACGGCA238190.13516292526186505No Hit
AACCGGCA198040.11237946899055272No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)