FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3356988
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA330963898.58950940545513No Hit
TAGGAAAA94300.28090657458412127No Hit
AAGGTAAA74260.2212102039089803No Hit
TAGCTAAA36550.10887736268345315No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)