FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2774675
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC174340.628325839963239No Hit
CTCCTAGTGAACGTAA145100.5229441285916369No Hit
TAGCTTTACCCTATCC124760.4496382459206934No Hit
CCAGGACTGTAACTCG96820.3489417679548055No Hit
ATCTGTACTGGGACTA92200.33229116923603663No Hit
CTTCCTTTGGCTCAGC88410.31863191184553147No Hit
GTTCTCGACCGTAGAG86410.31142386045212506No Hit
CGACCAGACGCGCTGT83620.30136862875832304No Hit
CGATCAAACCCGGCTA80360.28961950498707056No Hit
TGCTGCTACTTTCTTG70360.25357924802003834No Hit
GGGGGGGGGGGGGGGG68430.2466234784254012No Hit
ACAGCCGACTTGCGTA65020.2343337507996432No Hit
AACTTACCTCACCTAA60530.21815167542144576No Hit
GGCAACAGAATAGCAA60050.21642174308702822No Hit
CGCGTTGGAGCGGTTC57640.20773604115797345No Hit
ATCGAAAGATTTCCGC55550.20020362745186374No Hit
GTAACTGTGTGAAAGT53010.19104940218223754No Hit
AGTGGAGTGAGTTGAA52280.1884184634236442No Hit
CCCTGAACTAGCTTTG51260.1847423572130069No Hit
CAATTCGGATAACGGG49210.17735410453476533No Hit
GGGTAGAACCAGTCTA47100.16974961031472155No Hit
AAGAACCCTTAACCCA45500.1639831691999964No Hit
TTCCTAAACTAATGCC44090.15890149296764486No Hit
TCCGGGAACGTTCTCC43850.1580365268004361No Hit
CGCGATCGATATCTGG43820.15792840602953498No Hit
GTGAAGCGATCCCAGG43620.15720760089019437No Hit
TTTAGTCTGAGCAATA43320.15612639318118338No Hit
TGGAACACTCCTAGTA41570.14981934821195275No Hit
TGCAGATACTGCCACG41100.14812545613450223No Hit
TGATAGAGAGACTGTT40310.14527827583410668No Hit
AGTCCTGCTCGAACGA40250.14506203429230452No Hit
TGCAGTATGACACCGC39090.14088136448412877No Hit
CTTTAACTGTCCGTAA38470.1386468685521728No Hit
CACATCCTGAGCCTAT38280.13796210366979916No Hit
GCAACTTGAAGGTGCA37990.13691693621775525No Hit
AGGTGTGGATCATGTG37930.13670069467595303No Hit
CATAGGTACAAGGTGC37680.13579968825177724No Hit
TCTCAGAGATGCATGT37490.13511492336940362No Hit
CTATTGGGACTTGTGA37470.13504284285546955No Hit
TCAAAGCACTCTGCAA37170.1339616351464586No Hit
CTTAGATCTTGTCACA36950.13316874949318389No Hit
TACGTTTACTGCACCG36780.13255606512474435No Hit
ATTTCTGACGGGTAGT36300.1308261327903268No Hit
TGGCAATTGAGTGGTG35650.12848351608746972No Hit
TGAACTGTGAACGTAA35000.12614089938461262No Hit
TGAGGGATGTACGTTG34790.12538405398830493No Hit
ATGTACGTGTACTTTC34650.12487949039076647No Hit
TCTATGGGATGCTCAA34580.12462720859199726No Hit
GAGTGTTACACCTGCG34330.12372620216782146No Hit
AGAGTACCTTAATCGC34210.12329371908421707No Hit
CGAGTCTCTGCTACGC34210.12329371908421707No Hit
GGTCGCATGGTACTAC34140.12304143728544784No Hit
TTCTTAGACGTCCCGA34030.1226449944588105No Hit
GGTCTAAACTCCTACC33830.12192418931946986No Hit
GCATGATACTTGCGTA33540.12087902186742593No Hit
TACTGTTTGCTTAAGC32760.11806788182399741No Hit
GGGTGTGCTCGCAAAG32710.11788768053916225No Hit
TCCATTTGAAATCTGC32340.11655419103138207No Hit
GGGATGTGACTGGAAG32040.11547298332237109No Hit
CACCAGGTGCGCCACA31600.11388721201582166No Hit
CTACAACGAATCTGTG31360.1130222458486129No Hit
CTCAATTTGGAATCTC31280.11273392379287665No Hit
GTAATCTCTACACAAA31110.1121212394244371No Hit
AGACTACTGGCCCTAG30990.11168875634083271No Hit
TCGGACCGATAGGCGA30780.11093191094452502No Hit
TTGCGGTCTTTTGGGT30750.11082379017362395No Hit
CTAGCTCACGAATAGT30740.11078774991665691No Hit
GGCTGACTGAAACTGA30680.11057150837485472No Hit
TCCGGGTGAACACCTA30630.11039130709001954No Hit
CATTCTATGCCTAGCG30550.1101029850342833No Hit
CGAGTCTCTTGGAACG29780.10732788524782182No Hit
CTTTCGTCTCGAACGA29610.10671520087938227No Hit
TGCTAGTGAAGGCGTA29400.1059583554830746No Hit
AGGCGATGACCTGCGA28980.10444466469045925No Hit
CACATTACTGATGGAC28870.1040482218638219No Hit
ACCAAGTTGAAGCTAA28750.10361573878021749No Hit
CATAGTCGAAGATTCC28740.10357969852325048No Hit
TGTAAGCACGCGCTGT28640.10321929595358015No Hit
AGCCAATTGTTATGGC28240.10177768567489885No Hit
TGCGCAGACATCAGGG27920.10062439745195384No Hit
TAGTACCGAACGAGCA27790.10015587411138242No Hit
ATGTCCAGACCGCTAG27770.10008379359744836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)