FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3856049
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC374075597.01004836816129No Hit
GGGCCTAC270020.7002504376889401No Hit
GGGACTAA110960.28775567945324343No Hit
GGGACAAC88230.22880933307642096No Hit
GGGACTCC77020.19973812573439806No Hit
GGGAATAC60220.156170214641982No Hit
CGGACTAC58890.15272108834716572No Hit
GCGACTAC58170.15085389215749073No Hit
GGCACTAC56520.1465749008894856No Hit
GGGACTTC43470.11273196995162664No Hit
TGGACTAC39540.10254019074965075No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)