FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3087486
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT301846597.76449188757455No Hit
GGTAATGA150270.4867066603702818No Hit
GGTAATTT67260.21784714165505528No Hit
GGAAATGT53120.1720493631388126No Hit
GGTAAAGT50980.16511815762079568No Hit
GCTAATGT45500.14736908928493928No Hit
GGTAATCT37620.1218467063494377No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)