FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7062364
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA691558497.9216590931875No Hit
CAGGAAGC292390.41401151229248456No Hit
AAGGAAGA167740.23751253829454272No Hit
CAGGAACA128130.18142650251388912No Hit
CAGGAAAA107260.151875490982906No Hit
CAGCAAGA104290.14767010026670957No Hit
CACGAAGA100100.14173724265699134No Hit
CTGGAAGA74010.1047949383520872No Hit
CAGGAATA73600.10421439619934629No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)