FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2427923
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG234293596.49955950003357No Hit
CATCAGTA97680.4023191839279911No Hit
CAGCAGTG72540.29877389027576245No Hit
CCTCAGTG66210.27270222325831583No Hit
CAACAGTG61630.253838363078236No Hit
CTTCAGTG58980.24292368415308063No Hit
CATAAGTG57730.23777525069781869No Hit
CATCACTG55760.22966131957232583No Hit
CATCAGGG50810.2092735230894884No Hit
CATCAGAG43360.1785888596961271No Hit
CATCAGTC39870.1642144334890357No Hit
AATCAGTG38590.15894243763084742No Hit
CATGAGTG32190.13258245833990617No Hit
CATCAGTT30280.12471565202026588No Hit
CATCATTG27030.11132972503658477No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)