FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004949542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17774318
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAAGG1748715798.38440496001029No Hit
ATCCAAGA530830.29864999602235087No Hit
AACCAAGG388310.21846689138790024No Hit
ATCCAACG302570.1702287536433184No Hit
ATCCAAGC258980.14570460593762302No Hit
ATACAAGG240540.13533008692654197No Hit
ATCAAAGG198340.11158796641311357No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)