FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6432531
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC629606197.87844007281116No Hit
TTTATCCA493750.767582775737886No Hit
TATATCCC114960.17871658916218205No Hit
ATTATCCC96620.15020526135046997No Hit
TTAATCCC92690.1440956911051031No Hit
TTTAACCC84890.13196982649597802No Hit
TTTATCAC69600.10820002266603923No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)