FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6543051
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG180120.27528442006641857No Hit
ACTGTCCACAGGTCCC119360.1824225426333984No Hit
CTGGTGGACGCGGTTC115940.17719562326504867No Hit
GTGGTTAACGGCCTGT97950.14970080471633188No Hit
AAGACAAACAGTACGG83810.1280900913045No Hit
GTGTACTGACAGTCCG79600.12165578412884143No Hit
AGCTATCGACGGTTTA67390.10299476498043497No Hit
GGGTGAATGGACAAAT67270.10281136430084375No Hit
TGTCCCATGGCCAGCT66020.10090094055510189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)