FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3856049
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA205510.5329548457501448No Hit
CGACCAGACGCGCTGT189310.4909429314824579No Hit
TAGCTTTACCCTATCC179080.4644131856208259No Hit
GATGAATGACTCCTAC164850.427510127594333No Hit
CCAGGACTGTAACTCG130920.3395185071558997No Hit
ATCTGTACTGGGACTA125620.32577386853745893No Hit
CTTCCTTTGGCTCAGC121410.3148559574839428No Hit
GTTCTCGACCGTAGAG120630.31283316161179486No Hit
CGATCAAACCCGGCTA113030.293123868498559No Hit
AGACCATTGAATCCAC105820.2744259733213971No Hit
TGCTGCTACTTTCTTG99440.2578805404184438No Hit
GGGGGGGGGGGGGGGG93490.24245023857321313No Hit
ACAGCCGACTTGCGTA93440.24232057217115238No Hit
GGCAACAGAATAGCAA88170.22865373339394807No Hit
AACTTACCTCACCTAA84540.2192399526043367No Hit
ATCGAAAGATTTCCGC78730.20417271668487616No Hit
CGCGTTGGAGCGGTTC78130.202616719860147No Hit
AGTGGAGTGAGTTGAA75520.1958481336725752No Hit
CCCTGAACTAGCTTTG74450.1930732726684749No Hit
GTAACTGTGTGAAAGT73860.1915432091241579No Hit
CAATTCGGATAACGGG69760.1809105641551754No Hit
GGGTAGAACCAGTCTA63830.165532128870769No Hit
AAGAACCCTTAACCCA63810.16548026230994473No Hit
TTCCTAAACTAATGCC63690.1651690629449989No Hit
TTTAGTCTGAGCAATA63290.16413173172851278No Hit
CGCGATCGATATCTGG61050.15832267691619065No Hit
GTGAAGCGATCCCAGG59570.1544845514151921No Hit
TGCAGATACTGCCACG58080.15062049263378136No Hit
TGGAACACTCCTAGTA57980.15036115982965984No Hit
CTTTAACTGTCCGTAA56980.1477678317884446No Hit
TGATAGAGAGACTGTT56550.14665270073072204No Hit
AGTCCTGCTCGAACGA55960.14512263718640506No Hit
CACATCCTGAGCCTAT55090.14286644179054778No Hit
TGCAGTATGACACCGC54970.14255524242560194No Hit
TCTCAGAGATGCATGT54770.1420365768173589No Hit
AGGTGTGGATCATGTG53270.13814658475553604No Hit
CATAGGTACAAGGTGC53110.1377316522689416No Hit
GCAACTTGAAGGTGCA53020.13749825274523222No Hit
CTTAGATCTTGTCACA51230.13285619555145695No Hit
TCAAAGCACTCTGCAA50370.13062593343601184No Hit
CTATTGGGACTTGTGA50180.13013320110818094No Hit
TGGCAATTGAGTGGTG49990.12964046878035004No Hit
TACGTTTACTGCACCG49610.12865500412468825No Hit
ATTTCTGACGGGTAGT48940.12691747433707404No Hit
TGAACTGTGAACGTAA48570.1259579429618244No Hit
ATGTACGTGTACTTTC48570.1259579429618244No Hit
TCCGGGAACGTTCTCC48440.1256208103164664No Hit
AGAGTACCTTAATCGC47920.12427227973503449No Hit
TTCTTAGACGTCCCGA46980.12183455137629215No Hit
CGAGTCTCTGCTACGC46850.12149741873093418No Hit
TCTATGGGATGCTCAA46690.12108248624433975No Hit
TCCATTTGAAATCTGC46620.12090095328145467No Hit
GGTCTAAACTCCTACC46040.11939682301754984No Hit
TACTGTTTGCTTAAGC45400.11773709307117207No Hit
CTACAACGAATCTGTG44500.11540309783407834No Hit
GGGTGTGCTCGCAAAG44410.11516969831036898No Hit
GCATGATACTTGCGTA43850.11371743460728845No Hit
GGTCGCATGGTACTAC43630.11314690243822108No Hit
CATTCTATGCCTAGCG43530.11288756963409956No Hit
CACCAGGTGCGCCACA43020.11156497233307978No Hit
CTCAATTTGGAATCTC42870.1111759731268975No Hit
CGAGTCTCTTGGAACG42820.11104630672483673No Hit
TTGCGGTCTTTTGGGT42630.11055357439700585No Hit
CTTTCGTCTCGAACGA42440.11006084206917495No Hit
CTAGCTCACGAATAGT42390.10993117566711419No Hit
AGACTACTGGCCCTAG41710.10816771259908782No Hit
GTAATCTCTACACAAA41510.10764904699084477No Hit
ACCAAGTTGAAGCTAA41360.10726004778466249No Hit
GAGTGTTACACCTGCG41350.10723411450425033No Hit
GGGATGTGACTGGAAG41320.10715631466301388No Hit
AGCCAATTGTTATGGC41090.10655984921353436No Hit
TGCTAGTGAAGGCGTA41030.10640424953106146No Hit
TGTAAGCACGCGCTGT40990.10630051640941283No Hit
TCGGACCGATAGGCGA40930.10614491672693994No Hit
CATAGTCGAAGATTCC40860.10596338376405487No Hit
ACCTCAGCTAATCCGT40500.10502978566921738No Hit
CACATTACTGATGGAC40350.1046407864630351No Hit
ATGTCCAGACCGCTAG40040.10383685477025836No Hit
TGCGCAGACATCAGGG39510.10246239090841429No Hit
TAGTACCGAACGAGCA39100.10139912641151604No Hit
CTAACAGTGCATGATC38720.10041366175585424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)