FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1594094
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT304921.9128106623574268No Hit
AAATAGGTGTTGCGTA125810.7892257294739207No Hit
GGCTTGCGACGACATT121460.7619375018035323No Hit
TATCACTACTGGTCCG110400.6925563988070967No Hit
ATGGGTTACCATGCGC105650.6627589088221899No Hit
GTGTTGTGAGGGTAGT71870.4508517063611054No Hit
CTAATCTTGCCACTTC67330.42237157909132084No Hit
CTGCTTTCTCCACTTC63070.3956479354416992No Hit
AGAGAATTGCCTCCTA58530.3671678081719146No Hit
AGCCGAGCTGCCCTTT47260.2964693424603568No Hit
CTGGCCAGAGGAATGC44160.27702255952283866No Hit
AATGGTGCTTCGTACA41280.25895587085830574No Hit
GGGGGGGGGGGGGGGG39380.247036874864343No Hit
TCCCTGTGACCCGCAA36030.22602180298025085No Hit
GAGAGAAGACTCACGG32410.20331297903385873No Hit
TGCCGTTACAATCTGC30530.19151944615562194No Hit
CTTAATCTGGGAATTA29260.1835525383070258No Hit
TTGTCAACTAATACAG28970.18173332312899992No Hit
GCTGTTCTGATAGGTA28600.17941225548807035No Hit
GTAATCGTGATCCTCC27090.1699397902507631No Hit
TCTTTCCACCGAGTGA26890.1686851590935039No Hit
GCTCCTAACCTATCTT26850.16843423286205206No Hit
TAGCGCGACAAGACAT26790.1680578435148743No Hit
GGGATGTGAAGGTGCA26580.1667404807997521No Hit
TCGTATACTTTCTGGA26230.16454487627454842No Hit
AGTCCTGCTCCTAGTA24260.152186759375545No Hit
GCAAATCTGGAATTGA23790.14923837615598579No Hit
GTTGTTGGATTCCATT22170.139075863782186No Hit
TTGCGTCACCACTCAA22160.13901313222432304No Hit
TGCAATGACACCTTGA21830.13694299081484532No Hit
TGTCAATCTGGTGTCC20760.1302307141235084No Hit
TACGCCTTGCTGATCA20630.1294152038712899No Hit
CCTTTCTACTCGGGCT20280.12721959934608623No Hit
CAAGTGGGATAGCGAG20020.12558857884164926No Hit
GGTTGAACTTCTTTGT19910.12489853170515666No Hit
TTGTTTGTGGCGCTGT19650.12326751120071966No Hit
TACAACCGATCGCTAA19600.12295385341140484No Hit
CCCACCTCTCATGATC19170.1202563964232975No Hit
GAGGTGCCTTCGTACA19060.11956634928680492No Hit
TTCCACTCTCGAATCT18540.11630430827793091No Hit
AATCCAGACTACCAAC18480.11592791893075315No Hit
TAAGGGCGATTTCTTG18280.1146732877734939No Hit
AGAACGCGAGGAGTCA18160.11392050907913837No Hit
TCTTTCCACTTCGCAA17860.11203856234324953No Hit
CCTTTCTACTCATTTC17850.11197583078538656No Hit
CTGCCATTGTCTTTGT17820.11178763611179768No Hit
GTGGTAACTTTTCCGC16490.10344433891602378No Hit
GAGAGGTTGATGTGGG16410.10294248645312008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)