FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2423575
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT75000.3094601982608337No Hit
GGGGGGGGGGGGGGGG70490.29085132500541555No Hit
TCGCGGTGAGTCTTGA66360.27381038342118563No Hit
GTTAAGAGAGTACGTT47180.19467109538594843No Hit
CGCTTACTGATCACAC43320.17874421051545752No Hit
TACCAGTGATACGATC40580.1674385979389951No Hit
ATCTTACTGGTTTGGT38700.1596814623025902No Hit
TTGTGGTGAAAGACAT37740.1557203717648515No Hit
ATAGATGGAGAGTAAT37730.1556791104050834No Hit
ATTCCTAACTGCGTGC36860.15208937210525775No Hit
ATATGCCGAGAACAGC36490.1505627017938376No Hit
TGGAACACTTGAGGCA33570.13851438474154917No Hit
CTTGACGCTCAGGGTA32800.1353372600394046No Hit
CTTTCTGCTCTTGTGA32420.13376932836821637No Hit
GCGGTTCGAAGCAAGC31940.13178878309934705No Hit
AGCTCTGCTGGCCTGT31280.1290655333546517No Hit
AGGTAGCGATTGACCA31080.12824030615928947No Hit
GCTATACGACAGGTGA29940.12353651114572481No Hit
TGTGACTGACCGTTAA28500.1175948753391168No Hit
AGTTCACGACCAGAGA27870.1149954096737258No Hit
TTCCAAACTCCGCTAG27540.11363378480137812No Hit
ACGCTCTTGCCTCAAA27510.11351000072207379No Hit
ACTGGAACTCTGGAAG26890.1109517964164509No Hit
ACCCTTTCTAGGTGAC26760.11041539873946546No Hit
TCAGTCCACCCAGCAC26260.1083523307510599No Hit
TGTACCCTGCTGAGAG25980.10719701267755277No Hit
ACACTCCACCGTACAT25790.10641304684195867No Hit
CACAGCTCTCTCTGGG25560.10546403556729211No Hit
ACATGTGTGTCAATGC25550.10542277420752401No Hit
GGGAGCTCTTGATGAA25030.10327718349958223No Hit
TCCCAGACTCCTAACA24400.10067771783419123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)