FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3770461
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA368461497.72316966015562No Hit
TCCTGCGA164670.43673704621265147No Hit
TCATGCAA103340.2740778912711205No Hit
TCATGCGC71140.18867719358455107No Hit
TCAAGCGA66200.17557534741772957No Hit
ACATGCGA56040.14862904032159463No Hit
TCATGAGA45200.1198792402308365No Hit
TCATGCCA37890.10049169053863705No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)