FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3667362
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC192570.5250913326800026No Hit
CTCCTAGTGAACGTAA191380.5218464934740558No Hit
CGACCAGACGCGCTGT183670.5008232075262818No Hit
TAGCTTTACCCTATCC170400.4646391602465205No Hit
CCAGGACTGTAACTCG127340.3472250625926756No Hit
ATCTGTACTGGGACTA119960.32710160600453403No Hit
GTTCTCGACCGTAGAG117940.32159355962132996No Hit
CTTCCTTTGGCTCAGC113860.3104683966295119No Hit
CGATCAAACCCGGCTA106900.2914901774081752No Hit
AGACCATTGAATCCAC103800.2830372349389016No Hit
GGGGGGGGGGGGGGGG96620.2634591294778099No Hit
TGCTGCTACTTTCTTG96050.2619048787657177No Hit
ACAGCCGACTTGCGTA89370.24369015112225084No Hit
GGCAACAGAATAGCAA87810.23943641233126153No Hit
NNNNNNNNNNNNNNNN81260.22157616292037707No Hit
AACTTACCTCACCTAA78550.21418665514885085No Hit
CGCGTTGGAGCGGTTC76770.20933303011810672No Hit
ATCGAAAGATTTCCGC74980.20445213753101005No Hit
GTAACTGTGTGAAAGT71710.19553564660374406No Hit
CCCTGAACTAGCTTTG70990.19357238254636439No Hit
AGTGGAGTGAGTTGAA67960.18531031297155828No Hit
CAATTCGGATAACGGG67840.18498310229532836No Hit
GGGTAGAACCAGTCTA63800.17396700952892025No Hit
AAGAACCCTTAACCCA61880.16873163870924113No Hit
TTCCTAAACTAATGCC60260.16431429458013688No Hit
TTTAGTCTGAGCAATA58250.15883351575328533No Hit
GTGAAGCGATCCCAGG58230.15877898064058035No Hit
CGCGATCGATATCTGG56910.15517966320205095No Hit
TGGAACACTCCTAGTA56890.15512512808934595No Hit
TGCAGATACTGCCACG55520.1513894728690541No Hit
CTTTAACTGTCCGTAA55080.1501897003895443No Hit
CACATCCTGAGCCTAT54300.14806283099404968No Hit
AGTCCTGCTCGAACGA53070.14470892156269274No Hit
TGATAGAGAGACTGTT52910.14427264066105283No Hit
GCAACTTGAAGGTGCA52340.14271838994896058No Hit
TCTCAGAGATGCATGT51440.140264309877236No Hit
AGGTGTGGATCATGTG50850.13865552405243878No Hit
CATAGGTACAAGGTGC50730.13832831337620882No Hit
TCCGGGAACGTTCTCC50190.1368558653331741No Hit
TGCAGTATGACACCGC49620.13530161462108184No Hit
TACGTTTACTGCACCG49410.13472899593767945No Hit
CTTAGATCTTGTCACA49240.13426544747968705No Hit
TCAAAGCACTCTGCAA48480.1321931131968974No Hit
CTATTGGGACTTGTGA48310.13172956473890496No Hit
ATGTACGTGTACTTTC47030.12823931752578557No Hit
TGGCAATTGAGTGGTG46620.12712134771533323No Hit
ATTTCTGACGGGTAGT46440.12663053170098834No Hit
AGAGTACCTTAATCGC46220.12603064546123344No Hit
CGAGTCTCTGCTACGC45930.12523988632701108No Hit
TCTATGGGATGCTCAA45910.12518535121430607No Hit
GAGTGTTACACCTGCG45860.1250490134325436No Hit
GGTCTAAACTCCTACC45220.1233038898259839No Hit
TGAACTGTGAACGTAA44970.12262220091717152No Hit
TTCTTAGACGTCCCGA44640.12172237155753918No Hit
GGGTGTGCTCGCAAAG44230.12060440174708688No Hit
GGTCGCATGGTACTAC44070.12016812084544694No Hit
TCCATTTGAAATCTGC43410.11836846212618225No Hit
GCATGATACTTGCGTA42110.11482367980035785No Hit
CACCAGGTGCGCCACA42090.11476914468765288No Hit
GGGATGTGACTGGAAG41860.11414199089154548No Hit
CTACAACGAATCTGTG41820.11403292066613549No Hit
TACTGTTTGCTTAAGC41720.11376024510261055No Hit
CTCAATTTGGAATCTC41480.11310582375015066No Hit
GTAATCTCTACACAAA41450.11302402108109316No Hit
CATTCTATGCCTAGCG41230.11242413484133827No Hit
TTGCGGTCTTTTGGGT40610.11073354634748356No Hit
CTAGCTCACGAATAGT40250.10975191431879373No Hit
TGCGCAGACATCAGGG40150.10947923875526877No Hit
CTTTCGTCTCGAACGA39790.10849760672657893No Hit
TCGGACCGATAGGCGA39710.10827946627575896No Hit
CGAGTCTCTTGGAACG39610.10800679071223403No Hit
ACCAAGTTGAAGCTAA39360.10732510180342164No Hit
AGCCAATTGTTATGGC39170.10680701823272422No Hit
CACATTACTGATGGAC39030.1064252724437893No Hit
AGACTACTGGCCCTAG39030.1064252724437893No Hit
TGTAAGCACGCGCTGT38820.1058526537603869No Hit
ACCTCAGCTAATCCGT38740.10563451330956693No Hit
ATGTCCAGACCGCTAG38740.10563451330956693No Hit
TGCTAGTGAAGGCGTA38690.10549817552780445No Hit
TGAGGGATGTACGTTG38640.10536183774604198No Hit
TCCGGGTGAACACCTA38560.10514369729522201No Hit
CATAGTCGAAGATTCC38220.10421660037923718No Hit
AGGCGATGACCTGCGA38050.10375305192124476No Hit
GCCATTCACCGGAAGT37830.10315316568148986No Hit
TAGTACCGAACGAGCA37030.10097176117329022No Hit
AAAGCCTTGAACCAAA36710.10009919937001038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)