FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13937199
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT1366717098.06253035491565No Hit
GGTAATGA600640.4309617735959715No Hit
GGTAAAGT245010.17579572480811964No Hit
GGTTATGT230240.16519818652227036No Hit
GGAAATGT208200.14938439208624343No Hit
GGTAATCT154090.11056023523808478No Hit
GGTATTGT149940.10758259245634649No Hit
GGTAATTT144450.10364349393303489No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)