FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences832432
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC80705596.95146270205855No Hit
GGGCCTAC53100.6378899417610087No Hit
GGGACTAA23070.27713975435831395No Hit
GGGACAAC20950.25167220866088763No Hit
GGGACTCC16870.20265919618659545No Hit
GGGAATAC14090.1692630749418571No Hit
GCGACTAC13880.16674034635862148No Hit
GGCACTAC13820.1660195667634113No Hit
CGGACTAC13610.16349683818017569No Hit
GGTACTAC9990.12000980260249486No Hit
TGGACTAC9720.11676629442404905No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)