FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3823140
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG372846097.52350162431928No Hit
CCGTTATA144020.3767060583708679No Hit
CCGGTATG117370.30699895897089824No Hit
ACGTTATG102180.26726722013842025No Hit
CCGATATG70640.18476958730258375No Hit
CCGTTTTG63440.1659369000350497No Hit
CCGTTAAG55940.1463195174647018No Hit
CCGTTATC42280.11058972467657475No Hit
CCGTTATT41920.10964809031319805No Hit
CCCTTATG41660.10896802105075934No Hit
CCGTAATG40630.1062739005110982No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)