FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3969579
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG388113797.77200554517242No Hit
TTAGATTA119320.3005860319192539No Hit
ATAGATTG90840.2288403883636023No Hit
TTAGAATG85710.21591710355178723No Hit
TTAGATTC72090.18160616025024315No Hit
TTACATTG67620.17034552026801833No Hit
TTAGATTT61220.15422290373865843No Hit
TTAGATAG58710.1478998150685501No Hit
TAAGATTG58190.1465898524755396No Hit
TTAGCTTG46810.1179218249592715No Hit
TTATATTG40080.10096788601511647No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)