FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences832432
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA43660.5244872854479405No Hit
CGACCAGACGCGCTGT40280.4838833682511004No Hit
TAGCTTTACCCTATCC37880.4550521844426932No Hit
GATGAATGACTCCTAC28800.34597420570088605No Hit
CCAGGACTGTAACTCG28250.33936705941145945No Hit
ATCTGTACTGGGACTA26860.3226689987890903No Hit
CTTCCTTTGGCTCAGC26510.31846445115036426No Hit
GTTCTCGACCGTAGAG24860.2986430122820843No Hit
CGATCAAACCCGGCTA24630.29588002383377865No Hit
AGACCATTGAATCCAC22700.27269494685451784No Hit
ACAGCCGACTTGCGTA20950.25167220866088763No Hit
TGCTGCTACTTTCTTG20760.24938973994272207No Hit
GGGGGGGGGGGGGGGG20260.24338324331597055No Hit
CGCGTTGGAGCGGTTC18290.21971764660656967No Hit
AACTTACCTCACCTAA17580.21118842139658256No Hit
GGCAACAGAATAGCAA17410.20914621254348706No Hit
ATCGAAAGATTTCCGC17050.20482153497222597No Hit
CCCTGAACTAGCTTTG16590.19929555807561455No Hit
AGTGGAGTGAGTTGAA16090.19328906144886307No Hit
CAATTCGGATAACGGG15320.1840390566436658No Hit
GTAACTGTGTGAAAGT15200.18259749745324544No Hit
TTCCTAAACTAATGCC14160.17010398446960234No Hit
GGGTAGAACCAGTCTA13410.1610942395294751No Hit
CGCGATCGATATCTGG13400.16097410959694003No Hit
CACATCCTGAGCCTAT13070.15700982182328407No Hit
TTTAGTCTGAGCAATA13040.15664943202567896No Hit
AAGAACCCTTAACCCA13020.15640917216060893No Hit
TGGAACACTCCTAGTA12800.15376631364483825No Hit
GTGAAGCGATCCCAGG12770.15340592384723317No Hit
CTTTAACTGTCCGTAA12220.14679877755780654No Hit
TGCAGATACTGCCACG12120.14559747823245622No Hit
AGTCCTGCTCGAACGA11950.1435552693793607No Hit
TGCAGTATGACACCGC11890.14283448978415053No Hit
TGATAGAGAGACTGTT11810.1418734503238703No Hit
AGGTGTGGATCATGTG11550.1387500720779595No Hit
GCAACTTGAAGGTGCA11470.13778903261767927No Hit
TCTCAGAGATGCATGT11350.13634747342725892No Hit
CATAGGTACAAGGTGC11320.13598708362965384No Hit
TACGTTTACTGCACCG11190.13442539450669844No Hit
CTTAGATCTTGTCACA11080.13310396524881313No Hit
CTATTGGGACTTGTGA11080.13310396524881313No Hit
TGGCAATTGAGTGGTG10840.1302208468679724No Hit
ATGTACGTGTACTTTC10760.12925980740769216No Hit
TCAAAGCACTCTGCAA10590.12721759855459666No Hit
TGAACTGTGAACGTAA10470.1257760393641763No Hit
CTACAACGAATCTGTG10440.1254156495665712No Hit
TACTGTTTGCTTAAGC10360.12445461010629096No Hit
AGAGTACCTTAATCGC10320.12397409037615084No Hit
TCCATTTGAAATCTGC10220.12277279105080055No Hit
ATTTCTGACGGGTAGT10140.1218117515905203No Hit
CGAGTCTCTGCTACGC9980.11988967266995984No Hit
TTCTTAGACGTCCCGA9900.1189286332096796No Hit
CATTCTATGCCTAGCG9860.11844811347953947No Hit
TCTATGGGATGCTCAA9860.11844811347953947No Hit
GGTCTAAACTCCTACC9820.11796759374939934No Hit
CACCAGGTGCGCCACA9710.11664616449151403No Hit
CTAGCTCACGAATAGT9490.11400330597574337No Hit
GGGTGTGCTCGCAAAG9480.11388317604320833No Hit
TCCGGGAACGTTCTCC9300.1117208372575778No Hit
TCGGACCGATAGGCGA9290.11160070732504276No Hit
ACCAAGTTGAAGCTAA9270.11136044745997271No Hit
GGTCGCATGGTACTAC9100.1093182386068772No Hit
TTGCGGTCTTTTGGGT9100.1093182386068772No Hit
ACCTCAGCTAATCCGT9090.10919810867434215No Hit
TGTAAGCACGCGCTGT9060.10883771887673709No Hit
GTAATCTCTACACAAA9040.10859745901166701No Hit
TGCTAGTGAAGGCGTA9020.10835719914659696No Hit
CTTTCGTCTCGAACGA9000.1081169392815269No Hit
AGCCAATTGTTATGGC8960.10763641955138677No Hit
CTCAATTTGGAATCTC8950.10751628961885175No Hit
GCATGATACTTGCGTA8780.10547408076575623No Hit
AGACTACTGGCCCTAG8780.10547408076575623No Hit
AGGCGATGACCTGCGA8760.10523382090068618No Hit
CGAGTCTCTTGGAACG8680.10427278144040594No Hit
ATGTCCAGACCGCTAG8670.10415265150787091No Hit
GAGTGTTACACCTGCG8630.1036721317777308No Hit
ATAGCCAACCGTTCTC8600.1033117419801257No Hit
TGCGCAGACATCAGGG8580.10307148211505565No Hit
CTAACAGTGCATGATC8500.10211044265477541No Hit
CACATTACTGATGGAC8440.10138966305956523No Hit
AGCTTGTGATTGCGTA8430.10126953312703019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)