FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004949590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3186557
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCCT311258897.67871718597847No Hit
TCACTCCA187710.5890683894874624No Hit
ACACTCCT114490.35929060738596547No Hit
TCACTACT74570.23401432957263907No Hit
TCCCTCCT58240.18276779608838004No Hit
TCACACCT47400.14874988898676533No Hit
TCAATCCT39320.12339336782615218No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)