FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004949607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14487500
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG441590.30480759275237274No Hit
CCTAGCACTACAGGCA311560.21505435720448662No Hit
CGTTCTCGAATAACCC176120.12156686798964625No Hit
CATTCCTCTACGCGAA165750.11440897325280414No Hit
TCGATGATGTCCCGTT156860.10827264883520277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)