FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6198292
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG185390.2990985258519605No Hit
ACTGTCCACAGGTCCC117510.18958448553246604No Hit
CTGGTGGACGCGGTTC111570.18000120033067174No Hit
GTGGTTAACGGCCTGT96930.15638179033837063No Hit
AAGACAAACAGTACGG80770.13031009187692352No Hit
GTGTACTGACAGTCCG76950.12414710375051707No Hit
GGGTGAATGGACAAAT67730.109272038167934No Hit
AGCTATCGACGGTTTA66740.10767482396763495No Hit
TGTCCCATGGCCAGCT64890.10469013076505591No Hit
CATTCAACTCATCTTT63800.10293158179704989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)