FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3303381
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC323505197.93151319814457No Hit
TAAGCCCC127080.38469676976406897No Hit
AAAGCCAC91190.2760505070411194No Hit
TAACCCAC83670.2532859515750681No Hit
TAAGCCAA72410.21919966240648595No Hit
TAAACCAC55350.1675556043944068No Hit
TAATCCAC37690.11409522546748316No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)