FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3353392
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCGAG329579698.28245549580842No Hit
AGCACGAG60790.1812791346791547No Hit
AGCTCGAA53700.1601363634194869No Hit
AGCTCAAG49260.14689603839932822No Hit
AGCTCCAG39590.11805956476308169No Hit
AGCTCGAT34980.10431229036152051No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)