FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2778131
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT270174197.25030965062483No Hit
GCGCACCA196390.7069141088019247No Hit
GCGCCCCT182290.6561605626228569No Hit
GCGCACAT51730.18620432225838163No Hit
GCGCACCG32070.11543732099026287No Hit
GCGAACCT30050.10816624558021201No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)