FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1714660
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT355842.075280230483011No Hit
AAATAGGTGTTGCGTA142020.8282691612331308No Hit
TATCACTACTGGTCCG123970.72300047822892No Hit
ATGGGTTACCATGCGC118350.690224301027609No Hit
GGCTTGCGACGACATT89970.5247104382209884No Hit
GTGTTGTGAGGGTAGT82060.4785788436191432No Hit
CTAATCTTGCCACTTC77310.45087655861803505No Hit
CTGCTTTCTCCACTTC69430.40491992581619685No Hit
AGAGAATTGCCTCCTA64820.37803412921512136No Hit
AGCCGAGCTGCCCTTT51470.300176128212007No Hit
CTGGCCAGAGGAATGC50380.2938191828117528No Hit
AATGGTGCTTCGTACA45960.26804147761072167No Hit
GGGGGGGGGGGGGGGG45700.266525142010661No Hit
GCTCCTAACCTATCTT41010.23917278060956693No Hit
TCCCTGTGACCCGCAA39180.22850011080914No Hit
GAGAGAAGACTCACGG37390.21806072340872243No Hit
TGCCGTTACAATCTGC33650.19624881900784993No Hit
GCTGTTCTGATAGGTA33450.1950824070078033No Hit
TCTTTCCACCGAGTGA32820.19140820920765633No Hit
CTTAATCTGGGAATTA32390.18890042340755603No Hit
TTGTCAACTAATACAG31980.18650927880746038No Hit
GTAATCGTGATCCTCC31120.18149370720725974No Hit
TCGTATACTTTCTGGA30860.1799773716071991No Hit
TAGCGCGACAAGACAT29320.17099599920683983No Hit
GGGATGTGAAGGTGCA28110.16393920660655756No Hit
AGTCCTGCTCCTAGTA27270.1590402762063616No Hit
GCAAATCTGGAATTGA25960.151400277606056No Hit
GTTGTTGGATTCCATT25320.14766775920590672No Hit
TGCAATGACACCTTGA24860.1449850116057994No Hit
TTGCGTCACCACTCAA24320.14183569920567343No Hit
TGTCAATCTGGTGTCC23660.13798653960551946No Hit
CCTTTCTACTCGGGCT23340.13612028040544483No Hit
TTGTTTGTGGCGCTGT22760.13273768560530952No Hit
GGTTGAACTTCTTTGT22320.13017157920520686No Hit
TACGCCTTGCTGATCA22100.12888852600515555No Hit
CAAGTGGGATAGCGAG21500.12538929000501556No Hit
TACAACCGATCGCTAA21320.12433951920497358No Hit
CCCACCTCTCATGATC21170.12346471020493859No Hit
TAAGGGCGATTTCTTG20920.12200669520488028No Hit
AATCCAGACTACCAAC20680.1206070008048243No Hit
AGAACGCGAGGAGTCA20550.11984883300479394No Hit
CCTTTCTACTCATTTC20520.11967387120478695No Hit
TTCCACTCTCGAATCT20340.11862410040474497No Hit
CTGCCATTGTCTTTGT19800.11547478800461901No Hit
GCTCCTAACGAATAGT19570.11413341420456534No Hit
GCGACGTTGAGTGGTG18830.10981768980439272No Hit
GTGGTAACTTTTCCGC18680.10894288080435771No Hit
TCTTTCCACTTCGCAA18580.1083596748043344No Hit
GAGAGGTTGATGTGGG17920.10451051520418042No Hit
CGGAATTTGAGAGGCT17900.10439387400417575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)