FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3011317
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA291129496.67843006896982No Hit
ACCGCGAA234360.7782641282867263No Hit
AACGCCAA100020.33214703068458085No Hit
AACCCGAA78940.26214443713498115No Hit
AACGCAAA72910.24211997607691255No Hit
AACGAGAA61860.20542506816784817No Hit
AACGCGAT56910.18898707774704554No Hit
AAAGCGAA48810.1620885479675504No Hit
CACGCGAA44740.1485728669548905No Hit
AACGCGCA38130.1266223383323642No Hit
AACGCTAA34110.11327269762698514No Hit
AACTCGAA32280.1071956223805066No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)