FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2628539
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA257702198.04005190716212No Hit
CGTGCAAA95100.36179794174634655No Hit
CGTGCGAA46470.1767902245315744No Hit
CGAGCTAA36630.1393549800858956No Hit
CCTGCTAA35040.1333059924163195No Hit
CGTTCTAA34400.13087117976944607No Hit
CGTGGTAA31280.11900146811593816No Hit
CGTGCTTA30780.11709927073556832No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)