FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3540915
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAGC343518997.01416159382532No Hit
GGTCGCGC371511.049192087355952No Hit
GGTCGAGA85270.24081346205712365No Hit
GGTCGACC72160.20378913359964868No Hit
GGTCCAGC62640.1769034275039079No Hit
GGACGAGC62190.17563256954770165No Hit
GGTAGAGC56710.1601563437699013No Hit
CGTCGAGC43650.12327322175200478No Hit
GCTCGAGC43480.12279311985743799No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)