FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4985336
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG487846097.85619264177981No Hit
TTAGATTA151000.30288831083802575No Hit
ATAGATTG117720.23613252948246616No Hit
TTAGATTC102220.2050413452573708No Hit
TTAGAATG94090.18873351766059498No Hit
TTACATTG81670.16382045262345407No Hit
TTAGATTT81620.16372015848079247No Hit
TAAGATTG78680.15782286289229053No Hit
TTAGATAG67130.13465491593746137No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)