FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2531161
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT457281.8066017926161158No Hit
GAAGCAGTGGAACCTT143440.5666964685375604No Hit
GTTCTTCCTAACGTAA135520.5354064794772043No Hit
CGCTTAAGATAATAGG106490.42071602715117684No Hit
CATGGAGGATCGACAT105460.4166467482708528No Hit
TGTCCCATGAGACAAT102710.405782168736007No Hit
AAAGCATGATCTTTGT95860.3787194888037545No Hit
GATACGTACCGCTCGA88540.349799953460092No Hit
TGTCGAAACTTCGCAA86970.3435972662347437No Hit
TGAGCGCACAGGACAC85940.3395279873544196No Hit
TAATTGCCTGTCTGGC84850.3352216631024261No Hit
GGGGGGGGGGGGGGGG84140.33241662620433865No Hit
GGAAGGACTAGGTAAT76490.30219334131649467No Hit
AATGATGGAAAGCTAA69310.27382691184006075No Hit
CATGTCAGAGGTTTGT68260.26967861783584685No Hit
TCGACCTTGTTTCGCC62940.24866059488116324No Hit
GTGAGATCTCGATTAC56690.22396836866560443No Hit
GCTATGATGACCTGCG53840.21270871351130963No Hit
ATGGGTACTTGGCTGC52330.20674307165763064No Hit
CAGCTCACTGTTTACG49620.19603652237056435No Hit
AGCCTACCTTAACTCG48090.18999186539299556No Hit
AAACGACCTAGGGAGG47770.18872762341075894No Hit
TTGCGATGACATTCAG47570.18793747217186105No Hit
TGTTCCTCTTTATGGC46400.18331508742430846No Hit
CAATGTGACCAACGCC43710.17268755326113194No Hit
CTGCCTTGACCATAAC43330.17118626590722597No Hit
TAACCAGACATCACAC42600.16830221388524869No Hit
CATGCAAACGAAGGCT42530.16802566095163446No Hit
CCTGTTGACCCTAGTA42200.16672191140745296No Hit
CACAGCTCTGGACTGA42040.16608979041633465No Hit
CATGATGTGTCATGTG41280.1630872157085227No Hit
AGCTTGTGACTCACTC40340.15937350488570265No Hit
ATGCCGCGATGCCACG40150.15862286120874966No Hit
ATGGGTACTTTCGGGC39500.15605486968233157No Hit
TTGTTTGTGATACGCT39270.155146195757599No Hit
CTATTCAACCGAACGA39170.15475112013815004No Hit
CATTAGTCTATTCTGG37500.14815335729335274No Hit
ATTAGCGTGGTCGGTC36630.14471619940414696No Hit
CACTATACTACGCCAC36180.14293835911662672No Hit
AGAACGCGAGGAATAT36120.14270131374495737No Hit
GCATCTCTGAGCCTAT35790.14139756420077584No Hit
AGCTCGGACCTTAAGC35110.13871104998852307No Hit
GCAGATACTCGGCTCA35020.13835548193101901No Hit
GGGTCGTACCGCTCGA34710.1371307475107273No Hit
CCGCTATTGTTCGCAA34430.13602453577627027No Hit
TGGGCCATGCGTTCTC34080.13464177110819897No Hit
AACGTCCCTTACAGAA33920.13400965011708066No Hit
ATAGGAAACAGACTTC33820.1336145744976317No Hit
TTGTAACCTCATCCTC33410.13199476445789105No Hit
AACCAACACCGGAATG33350.1317577190862217No Hit
TTGACGTGACCTCAAA32810.1296243107411974No Hit
GATACCATGTCTGGAT32800.12958480317925253No Hit
CTGCCATTGCACAGTT32640.12895268218813422No Hit
CCCAATGCTGGAATGC32520.1284785914447955No Hit
GGGATCAGATGAGTAA32490.1283600687589608No Hit
CTGATTACTGCTTTGA31860.12587109235643248No Hit
TGGAGTTACAAGTCTC31690.1251994638033693No Hit
ATAGCCAACATGGCCC31330.1237771915733531No Hit
ATCTTACTGCGCACTG31100.12286851764862054No Hit
CCTACGGGATGGAACG30830.1218018134761084No Hit
TGTTTGTTGCGCTCGA30620.12097215467526562No Hit
CGATCAAACCGATCGC30520.12057707905581667No Hit
CGCTTACTGGCCACGT30470.12037954124609221No Hit
TCCAAAGTGAAGGCCA30330.1198264353788637No Hit
TCAGGCTCTTAAAGCA30110.11895726901607602No Hit
CGCTGAGTGTTAGCTG29750.11753499678605983No Hit
CGCTTCCCTGCGCTGT29670.11721893629050067No Hit
CATGTTACTAACGTGG29430.11627075480382322No Hit
TTCTAACACTACGTTG29370.11603370943215387No Hit
GTAAGAAACGACAAAT29290.11571764893659471No Hit
TGGGTGCACTTCTGAG29090.11492749769769683No Hit
GCGTCGATGCTTGAAC28800.11378177840129489No Hit
GGTAGCCTGTGCCACG28740.11354473302962553No Hit
CCTCCCTTGTTTCGCC28530.11271507422878276No Hit
ATTGAGAGATGATCAC28510.11263605910489297No Hit
CTTAGGCCTTATGACC28400.11220147592349915No Hit
CTCGGATCTTTCTGAG28280.11172738518016041No Hit
CGAGTCTCTTACTTTC28100.11101624906515231No Hit
GCATAGTACGCTCCTT27990.11058166588375849No Hit
TACGCCTTGGGTTGAG27810.10987052976875039No Hit
AGTGGTACTCAACGCC27620.10911988609179742No Hit
TATCTCCCTGGAATTA27550.10884333315818315No Hit
GTGTACTGAATCACAC27450.1084482575387342No Hit
GGGCTGACTAATACAG27370.10813219704317505No Hit
ATCGCAATGTAACTCG27370.10813219704317505No Hit
CCTTCAGTGTAGCTTG27300.1078556441095608No Hit
TACAACCGATTCCATT27290.10781613654761589No Hit
AGAACAATGAGTCGGA27080.10698647774677313No Hit
TGAGATAGACTCATCC27040.10682844749899355No Hit
GGTCAGAGAACCAGTT26850.10607780382204056No Hit
AACAGCTACTCGAGAG26550.10489257696369374No Hit
AACCACTGAAAACATG26490.10465553159202437No Hit
GTTGCTAGACGCTCGA26410.10433947109646521No Hit
GCGACAAGAAAGGCTG26350.10410242572479586No Hit
GCATATCGAGCCGCTA26330.10402341060090606No Hit
CATGTCAGAACAGGTG26270.1037863652292367No Hit
AGGTTACTGGTCCCGA26140.10327276692395307No Hit
TTCACGCTGTGGGCAA26110.1031542442381184No Hit
GAAAGTAACCCTGCGA26090.1030752291142286No Hit
TTCTATGACCAACGCC26050.10291719886644903No Hit
AGCCGGTACGCGCAAA25920.1024036005611654No Hit
AGAACATGAAAGCTAA25850.10212704762755115No Hit
ATTCCTAACATTGCCA25490.10070477539753497No Hit
AGAGAATTGCCCGCAA25410.1003887149019758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)